PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05837.30
Common NameJCGZ_05905, LOC105650691
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 211aa    MW: 23257 Da    PI: 7.5117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05837.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.2e-202978255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa a+++a+++++g
  Jcr4S05837.30 29 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAATAYDKAAREFRG 78
                   69*******.**********8...557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.5E-332986IPR001471AP2/ERF domain
CDDcd000183.66E-312986No hitNo description
SMARTSM003801.9E-382992IPR001471AP2/ERF domain
PfamPF008471.9E-132978IPR001471AP2/ERF domain
PROSITE profilePS5103223.7362986IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-232987IPR016177DNA-binding domain
PRINTSPR003673.6E-113041IPR001471AP2/ERF domain
PRINTSPR003673.6E-115268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAPKEKSIAA STGLKKGTIT NNNDKKEMHY RGVRKRPWGR YAAEIRDPGK KSRVWLGTFD  60
TAEEAATAYD KAAREFRGPK AKTNFPLPTE ITPIKTKVAN CTDDPSPSQS STVESSSPPA  120
AREITHDLVE RFPFVYQQQN VVGPVWFFDG SIRPEFMTRQ FPVRFEPVGL AFNGGLVSGG  180
SQSDSDSSSV VDGKPARDFD LNLLPSEEED A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-232687264ATERF1
2gcc_A2e-232687264ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012093026.11e-155PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9FE679e-52ERF80_ARATH; Ethylene-responsive transcription factor 9
SwissprotQ9LW492e-51ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A067J8N51e-155A0A067J8N5_JATCU; Uncharacterized protein
STRINGPOPTR_0007s01110.12e-58(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-39erf domain protein 9
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]